How does it work
The easy-to-use cloud-based pipeline greatly facilitates the handling of raw BRB-seq and DRUG-seq data.
Simply upload your fastq files and press a button, it's that simple!
The pipeline allows the user to align BRB-seq and DRUG-seq data to the genome of choice and produces:
- a report file displaying the main alignment statistics (e.g. mapping rate and number of detected genes).
- a gene count matrix that can be easily used for offline gene expression analysis.
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From 5 mins to 20 mins depending on file size
Upload raw read1 and read2.fastq files
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Upload sample info in .xls format
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Select genome of interest
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From 20 min to 24 hours depending on .fastq and genome size
Launch platform
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Download results
- Gene count matrix
- UMI count matrix
- PDF QC report file with individual sample info:
- Number of raw reads/sample
- Alignment stats
- Number of detected genes
- UMI duplication levels
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