Software

Demultiplexing, alignment and gene counts at the click of a button.

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How does it work

The easy-to-use cloud-based BRB-seq pipeline greatly facilitates the handling of raw BRB-seq data.

The easy-to-use cloud-based BRB-seq pipeline greatly facilitates the handling of raw BRB-seq data.

Simply upload your fastq files and press a button, it's that simple!

The pipeline allows the user to align BRB-seq data to the genome of choice and produces:

  • a report file displaying the main alignment statistics (e.g. mapping rate and number of detected genes).
  • a gene count matrix that can be easily used for offline gene expression analysis.
  • From 5 mins to 20 mins depending on file size

    Upload raw read1 and read2.fastq files

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  • Upload sample info in .xls format

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  • Select genome of interest

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  • From 20 min to 24 hours depending on .fastq and genome size

    Launch platform

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  • Download results

    • Gene count matrix
    • UMI count matrix
    • PDF QC report file with individual sample info:
      • Number of raw reads/sample
      • Alignment stats
      • Number of detected genes
      • UMI duplication levels
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Products & Services

Our BRB-seq kit makes it possible to process virtually any number of RNA samples in one single tube, which helps reduce technical variation, turnaround times and costs. Experience sample to sequencing-ready library in one day.

Our products

Our BRB-seq service delivers raw sequencing data (fastq files), gene count matrices and analysis report files. A cost-efficient option suitable for projects of all sizes.

Our services

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