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Explore publications, scientific posters, application notes, webinars, and other resources related to our technologies.

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2020
  • 3' BRB-seq, BRB-seq

Cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel.

Frochaux, M. V., Bou Sleiman, M., Gardeux, V., Dainese, R., Hollis, B., Litovchenko, M., Braman, V. S., Andreani, T., Osman, D., & Deplancke, B.
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2021
  • 3' BRB-seq, BRB-seq

Cooperative Blockade of CK2 and ATM Kinases Drives Apoptosis in VHL-Deficient Renal Carcinoma Cells through ROS Overproduction.

Giacosa, S., Pillet, C., Séraudie, I., Guyon, L., Wallez, Y., Roelants, C., Battail, C., Evrard, B., Chalmel, F., Barette, C., Soleilhac, E., Fauvarque, M.-O., Franquet, Q., Sarrazin, C., Peilleron, N., Fiard, G., Long, J.-A., Descotes, J.-L., Cochet, C., & Filhol, O.
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2019
  • 3' BRB-seq, BRB-seq

Mitochondrial haplotypes affect metabolic phenotypes in the Drosophila Genetic Reference Panel.

Bevers, R. P. J., Litovchenko, M., Kapopoulou, A., Braman, V. S., Robinson, M. R., Auwerx, J., Hollis, B., & Deplancke, B.
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2019
  • 3' BRB-seq, BRB-seq

Sex-dependent and sex-independent regulatory systems of size variation in natural populations.

Okada, H., Yagi, R., Gardeux, V., Deplancke, B., & Hafen, E.
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2019
  • 3' BRB-seq, BRB-seq

Commensal Gut Bacteria Buffer the Impact of Host Genetic Variants on Drosophila Developmental Traits under Nutritional Stress.

Ma, D., Bou-Sleiman, M., Joncour, P., Indelicato, C.-E., Frochaux, M., Braman, V., Litovchenko, M., Storelli, G., Deplancke, B., & Leulier, F.
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2020
  • 3' BRB-seq, BRB-seq

Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo.

Liu, J., Frochaux, M., Gardeux, V., Deplancke, B., & Robinson-Rechavi, M.
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2021
  • 3' BRB-seq, BRB-seq

The Hippo pathway controls myofibril assembly and muscle fiber growth by regulating sarcomeric gene expression.

Kaya-Çopur, A., Marchiano, F., Hein, M. Y., Alpern, D., Russeil, J., Luis, N. M., Mann, M., Deplancke, B., Habermann, B. H., & Schnorrer, F.
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2020
  • 3' BRB-seq, BRB-seq

Mitochondrial gene signature in the prefrontal cortex for differential susceptibility to chronic stress.

Weger, M., Alpern, D., Cherix, A., Ghosal, S., Grosse, J., Russeil, J., Gruetter, R., de Kloet, E. R., Deplancke, B., & Sandi, C.
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2022
  • BRB-seq

Profiling the Atopic Dermatitis Epidermal Transcriptome by Tape Stripping and BRB-seq.

Hu, T., Todberg, T., Andersen, D., Danneskiold-Samsøe, N. B., Hansen, S. B. N., Kristiansen, K., Ewald, D. A., Brix, S., Rosa, J. C. d., Hoof, I., Skov, L., & Litman, T.
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2022
  • 3' BRB-seq, BRB-seq

Unusual nucleosome formation and transcriptome influence by the histone H3mm18 variant.

Hirai, S., Tomimatsu, K., Miyawaki-Kuwakado, A., Takizawa, Y., Komatsu, T., Tachibana, T., Fukushima, Y., Takeda, Y., Negishi, L., Kujirai, T., Koyama, M., Ohkawa, Y., & Kurumizaka, H.
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2019

Systems-Genetics-Based Inference of a Core Regulatory Network Underlying White Fat Browning.

Li, Y., Schwalie, P. C., Bast-Habersbrunner, A., Mocek, S., Russeil, J., Fromme, T., Deplancke, B., & Klingenspor, M.
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2021
  • 3' BRB-seq, BRB-seq

Extensive tissue-specific expression variation and novel regulators underlying circadian behavior.

Litovchenko, M., Meireles-Filho, A. C. A., Frochaux, M. V., Bevers, R. P. J., Prunotto, A., Anduaga, A. M., Hollis, B., Gardeux, V., Braman, V. S., Russeil, J. M. C., Kadener, S., dal Peraro, M., & Deplancke, B.
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2022
  • 3' BRB-seq, BRB-seq

Measuring transcription factor binding and gene expression using barcoded self-reporting transposon calling cards and transcriptomes.

Lalli, M., Yen, A., Thopte, U., Dong, F., Moudgil, A., Chen, X., Milbrandt, J., Dougherty, Joseph D., & Mitra, Robi D.
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2023
  • 3' BRB-seq, BRB-seq

CRISPR‑Cas9 genetic screen leads to the discovery of L‑Moses, a KAT2B inhibitor that attenuates Tunicamycin‑mediated neuronal cell death.

Sofa Pavlou, Stefanie Foskolou, Nikolaos Patikas, Sarah F. Field, Evangelia K. Papachristou, Clive D’ Santos, Abigail R. Edwards, Kamal Kishore, Rizwan Ansari, Sandeep S. Rajan, Hugo J. R. Fernandes, Emmanouil Metzakopian.
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2023
  • 3' BRB-seq, BRB-seq

Multiscale physiological responses to nitrogen supplementation of maize hybrids.

Sheng Ying, Brandon Webster, Lina Gomez-Cano, Kiran-Kumar Shivaiah, Qianjie Wang, Linsey Newton, Erich Grotewold, Addie Thompson and Peter K. Lundquist.
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2024
  • 3' BRB-seq, BRB-seq

Transcriptomic profiling of the response to excess iodide in Keap1 hypomorphic mice reveals new gene-environment interactions in thyroid homeostasis.

Panos G. Ziros, Dionysios V. Chartoumpekis, Ilias Georgakopoulos-Soares, Georgios Psarias, Gerasimos P. Sykiotis.
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2020
  • 3' BRB-seq, BRB-seq

Classification of four distinct osteoarthritis subtypes with a knee joint tissue transcriptome atlas.

Yuan, C., Pan, Z., Zhao, K., Li, J., Sheng, Z., Yao, X., Liu, H., Zhang, X., Yang, Y., Yu, D., Zhang, Y., Xu, Y., Zhang, Z.-Y., Huang, T., Liu, W., & Ouyang, H.
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