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2026
  • 3' BRB-seq, BRB-seq

Cell-cycle inhibition preserves robust development but rebalances lineages in mouse gastruloids.

Maxine Leonardi, Yves Paychère, Felix Naef.
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2026
  • 3' BRB-seq, BRB-seq

Computational Multiplexed Transcriptomic Analysis: Modes Of Action In The Fungal Plant Pathogen Botrytis Cinerea

Yunhee Jeong, Benjamin Buer, Nicolas Arning, Tabea Schlemeyerb, Luigi Di Vierto, Alix Buu Hoang, Sven Geibel
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2026

Linking high-throughput transcriptomics and imaging for functional drug response profiling

Alexandre Coudray, Silja Placzek, Marine Vallez, Alix Buu Hoang, Vincent Hahaut and Daniel Alpern
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2026

1536-DRUG-seq: Transcriptomics Platform for Ultra-Scalable Phenotypic Screening

Elodie Koenig, Mark Ofield, Adam Peall, Elizabeth Bourne, Humberto Ferreira, Ji Hoon Han, Silja Placzek, Marine Vallez, Vincent Hahaut, Riccardo Dainese, Daniel Alpern
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2024
  • 3' BRB-seq, BRB-seq

Transcriptional landscape of human keratinocyte models exposed to 60-GHz millimeter-waves.

Catherine Martin, Bertrand Evrard, Frédéric Percevault, Kate Ryder, Thomas Darde, Aurélie Lardenois, Maxim Zhadobov, Ronan Sauleau, Frédéric Chalmel, Yves Le Dréan, Denis Habauzit.
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2024
  • 3' DRUG-seq, DRUG-seq

CRIPTO’s multifaceted role in driving aggressive prostate cancer unveiled by in vivo, organoid, and patient data.

Rodrigues Sousa, E., de Brot, S., Zoni, E. et al.
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2024
  • 3' BRB-seq, BRB-seq

Multi‐well plate lid for single‐step pooling of 96 samples for high‐throughput barcode‐based sequencing.

Stéphanie Boder‐Pasche, Mustafa Demir, Sarah Heub, Manon Garzuel, Réal Ischer, Daniel Migliozzi,  Siegfried Graf, Noa Schmid, H. Baris Atakan, Daria Gudkova, Daniel Alpern,  Riccardo Dainese, Bart Deplancke, Gilles Weder
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2024
  • 3' BRB-seq, BRB-seq

Transcriptomic profiling of the response to excess iodide in Keap1 hypomorphic mice reveals new gene-environment interactions in thyroid homeostasis.

Panos G. Ziros, Dionysios V. Chartoumpekis, Ilias Georgakopoulos-Soares, Georgios Psarias, Gerasimos P. Sykiotis.
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2024

Radiana Ferrero, Pernille Yde Rainer, Marie Rumpler, Julie Russeil, Magda Zachara, Joern Pezoldt, Guido van Mierlo, Vincent Gardeux, Wouter Saelens, Daniel Alpern, Lucie Favre, Nathalie Vionnet, Styliani Mantziari, Tobias Zingg, Nelly Pitteloud, Michel Suter, Maurice Matter, Kai-Uwe Schlaudraff, Carles Canto, and Bart Deplancke. A human omentum-specific mesothelial-like stromal population inhibits adipogenesis through IGFBP2 secretion.

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2024

Radiana Ferrero, Pernille Yde Rainer, Marie Rumpler, Julie Russeil, Magda Zachara, Joern Pezoldt, Guido van Mierlo, Vincent Gardeux, Wouter Saelens, Daniel Alpern, Lucie Favre, Nathalie Vionnet, Styliani Mantziari, Tobias Zingg, Nelly Pitteloud, Michel Suter, Maurice Matter, Kai-Uwe Schlaudraff, Carles Canto, and Bart Deplancke. A human omentum-specific mesothelial-like stromal population inhibits adipogenesis through IGFBP2 secretion.

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2024

Katarina Pinjusic, Giovanna Ambrosini, Joao Lourenco, Nadine Fournier, Christian Iseli, Nicolas Guex, Olga Egorova, Sina Nassiri and Daniel B. Constam. Inhibition of anti-tumor immunity by melanoma cell-derived Activin-A depends on STING.

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2024
  • 3' BRB-seq, BRB-seq

Sustained Vascular Inflammatory Effects of SARS‑CoV‑2 Spike Protein on Human Endothelial Cells.

Mitra Gultom, Lin Lin,  Camilla Blunk Brandt, Anastasia Milusev,  Alain Despont, Jane Shaw, Yvonne Döring, Yonglun Luo, Robert Rieben.
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2019
  • 3' BRB-seq, BRB-seq

Mitochondrial haplotypes affect metabolic phenotypes in the Drosophila Genetic Reference Panel.

Bevers, R. P. J., Litovchenko, M., Kapopoulou, A., Braman, V. S., Robinson, M. R., Auwerx, J., Hollis, B., & Deplancke, B.
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2019
  • 3' BRB-seq, BRB-seq

Sex-dependent and sex-independent regulatory systems of size variation in natural populations.

Okada, H., Yagi, R., Gardeux, V., Deplancke, B., & Hafen, E.
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2019
  • 3' BRB-seq, BRB-seq

Commensal Gut Bacteria Buffer the Impact of Host Genetic Variants on Drosophila Developmental Traits under Nutritional Stress.

Ma, D., Bou-Sleiman, M., Joncour, P., Indelicato, C.-E., Frochaux, M., Braman, V., Litovchenko, M., Storelli, G., Deplancke, B., & Leulier, F.
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2019

Systems-Genetics-Based Inference of a Core Regulatory Network Underlying White Fat Browning.

Li, Y., Schwalie, P. C., Bast-Habersbrunner, A., Mocek, S., Russeil, J., Fromme, T., Deplancke, B., & Klingenspor, M.
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