Publications

IMG_SS_244315159
  1. Bast-Habersbrunner, A., Kiefer, C., Weber, P., Fromme, T., Schießl, A., Schwalie, P.C., Deplancke, B., Li, Y., and Klingenspor, M. (2021). LncRNA Ctcflos orchestrates transcription and alternative splicing in thermogenic adipogenesis. EMBO Rep 22, e51289. https://doi.org/10.15252/embr.202051289.
     

  2. Bevers, R.P.J., Litovchenko, M., Kapopoulou, A., Braman, V.S., Robinson, M.R., Auwerx, J., Hollis, B., and Deplancke, B. (2019). Mitochondrial haplotypes affect metabolic phenotypes in the Drosophila Genetic Reference Panel. Nat Metab 1, 1226–1242. https://doi.org/10.1038/s42255-019-0147-3.
     

  3. Frochaux, M.V., Bou Sleiman, M., Gardeux, V., Dainese, R., Hollis, B., Litovchenko, M., Braman, V.S., Andreani, T., Osman, D., and Deplancke, B. (2020). cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel. Genome Biol 21, 6. https://doi.org/10.1186/s13059-019-1912-z.
     

  4. Giacosa, S., Pillet, C., Séraudie, I., Guyon, L., Wallez, Y., Roelants, C., Battail, C., Evrard, B., Chalmel, F., Barette, C., et al. (2021). Cooperative Blockade of CK2 and ATM Kinases Drives Apoptosis in VHL-Deficient Renal Carcinoma Cells through ROS Overproduction. Cancers (Basel) 13, 576. https://doi.org/10.3390/cancers13030576.
     

  5. Kaya-Çopur, A., Marchiano, F., Hein, M.Y., Alpern, D., Russeil, J., Luis, N.M., Mann, M., Deplancke, B., Habermann, B.H., and Schnorrer, F. (2021). The Hippo pathway controls myofibril assembly and muscle fiber growth by regulating sarcomeric gene expression. Elife 10, e63726. https://doi.org/10.7554/eLife.63726.
     

  6. Li, Y., Schwalie, P.C., Bast-Habersbrunner, A., Mocek, S., Russeil, J., Fromme, T., Deplancke, B., and Klingenspor, M. (2019). Systems-Genetics-Based Inference of a Core Regulatory Network Underlying White Fat Browning. Cell Rep 29, 4099-4113.e5. https://doi.org/10.1016/j.celrep.2019.11.053.
     

  7. Litovchenko, M., Meireles-Filho, A.C.A., Frochaux, M.V., Bevers, R.P.J., Prunotto, A., Anduaga, A.M., Hollis, B., Gardeux, V., Braman, V.S., Russeil, J.M.C., et al. (2021). Extensive tissue-specific expression variation and novel regulators underlying circadian behavior. Sci Adv 7, eabc3781. https://doi.org/10.1126/sciadv.abc3781.
     

  8. Liu, J., Frochaux, M., Gardeux, V., Deplancke, B., and Robinson-Rechavi, M. (2020). Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo. BMC Biol 18, 129. https://doi.org/10.1186/s12915-020-00842-z.
     

  9. Ma, D., Bou-Sleiman, M., Joncour, P., Indelicato, C.-E., Frochaux, M., Braman, V., Litovchenko, M., Storelli, G., Deplancke, B., and Leulier, F. (2019). Commensal Gut Bacteria Buffer the Impact of Host Genetic Variants on Drosophila Developmental Traits under Nutritional Stress. IScience 19, 436–447. https://doi.org/10.1016/j.isci.2019.07.048.
     

  10. Okada, H., Yagi, R., Gardeux, V., Deplancke, B., and Hafen, E. (2019). Sex-dependent and sex-independent regulatory systems of size variation in natural populations. Mol Syst Biol 15, e9012. https://doi.org/10.15252/msb.20199012.
     

  11. Pradhan, R.N., Bues, J.J., Gardeux, V., Schwalie, P.C., Alpern, D., Chen, W., Russeil, J., Raghav, S.K., and Deplancke, B. (2017). Dissecting the brown adipogenic regulatory network using integrative genomics. Sci Rep 7, 42130. https://doi.org/10.1038/srep42130.
     

  12. Przystal, J.M., Cosentino, C.C., Yadavilli, S., Zhang, J., Laternser, S., Bonner, E.R., Prasad, R., Dawood, A.A., Lobeto, N., Chong, W.C., et al. (2022). Imipridones affect tumor bioenergetics and promote cell lineage differentiation in diffuse midline gliomas. Neuro Oncol noac041. https://doi.org/10.1093/neuonc/noac041.
     

  13. Schwalie, P.C., Dong, H., Zachara, M., Russeil, J., Alpern, D., Akchiche, N., Caprara, C., Sun, W., Schlaudraff, K.-U., Soldati, G., et al. (2018). A stromal cell population that inhibits adipogenesis in mammalian fat depots. Nature 559, 103–108. https://doi.org/10.1038/s41586-018-0226-8.
     

  14. Thorball, C.W., Oudot-Mellakh, T., Ehsan, N., Hammer, C., Santoni, F.A., Niay, J., Costagliola, D., Goujard, C., Meyer, L., Wang, S.S., et al. (2021). Genetic variation near CXCL12 is associated with susceptibility to HIV-related non-Hodgkin lymphoma. Haematologica 106, 2233–2241. https://doi.org/10.3324/haematol.2020.247023.
     

  15. V’kovski, P., Gultom, M., Kelly, J.N., Steiner, S., Russeil, J., Mangeat, B., Cora, E., Pezoldt, J., Holwerda, M., Kratzel, A., et al. (2021). Disparate temperature-dependent virus-host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium. PLoS Biol 19, e3001158. https://doi.org/10.1371/journal.pbio.3001158.
     

  16. Weger, M., Alpern, D., Cherix, A., Ghosal, S., Grosse, J., Russeil, J., Gruetter, R., de Kloet, E.R., Deplancke, B., and Sandi, C. (2020). Mitochondrial gene signature in the prefrontal cortex for differential susceptibility to chronic stress. Sci Rep 10, 18308. https://doi.org/10.1038/s41598-020-75326-9.
     

  17. Yuan, C., Pan, Z., Zhao, K., Li, J., Sheng, Z., Yao, X., Liu, H., Zhang, X., Yang, Y., Yu, D., et al. (2020). Classification of four distinct osteoarthritis subtypes with a knee joint tissue transcriptome atlas. Bone Res 8, 38. https://doi.org/10.1038/s41413-020-00109-x.